2017

Ivamoto S.T., Sakuray L.M., Ferreira L.P., Kitzberger C.S.G., Scholz M.B.D.S., Pot D., Leroy T., Vieira L.G.E., Domingues D.S., Pereira L.F.P. 2017. Diterpenes biochemical profile and transcriptional analysis of cytochrome P450s genes in leaves, roots, flowers, and during Coffea arabica L. fruit development. Plant Physiology and Biochemistry, 111 : p. 340- 347.

http://dx.doi.org/10.1016/j.plaphy.2016.12.004

2016

Dos Santos Scholz M.B., Good-Kitzberger C.S., Pagiatto N.F., Protasio Pereira L.F., Davrieux F., Pot D., Charmetant P., Leroy T. 2016. Chemical composition in wild Ethiopian Arabica coffee accessions. Euphytica, 209 (2) : p. 429-438. http://dx.doi.org/10.1007/s10681-016-1653-y

Motilal L.A., Zhang D., Mischke S., Meinhardt L.W., Boccara M., Fouet O., Lanaud C. 2016. Association mapping of seed and disease resistance traits in Theobroma cacao L.. Planta, 244 (6) : p. 1265-1276.
http://dx.doi.org/10.1007/s00425-016-2582-7 

Sarah G., Homa F., Pointet S., Contreras S., Sabot F., Nabholz B., Santoni S., Sauné L., Ardisson M., Chantret N., Sauvage C., Tregear J., Jourda C., Pot D., Vigouroux Y., Chaïr H., Scarcelli N., Billot C., Yahiaoui N., Bacilieri R., Khadari B., Boccara M., Barnaud A., Péros J.P., Labouisse J.P., Pham J.L., David J., Glemin S., Ruiz M. 2016. A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Molecular Ecology Resources : 16 p. http://agritrop.cirad.fr/581322/

http://www.dx.doi.org/10.1111/1755-0998.12587 http://www.ncbi.nlm.nih.gov/pubmed/?term=PRJNA326055

Souto Mofatto L., de Araújo Carneiro F., Gomes Vieira N., Duarte K.E., Vidal R.O., Alekcevetch J.C., Guitton Cotta M., Verdeil J.L., Lapeyre-Montes F., Lartaud M., Leroy T., De Bellis F., Pot D., Costa Rodrigues G., Falsarella Carazzolle M., Guimarães Pereira G.A., Carvalho Andrade A., Marraccini P. 2016. Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars. BMC Plant Biology, 16 (94) : 18 p. http://dx.doi.org/10.1186/s12870-016-0777-5

Vinecky F., Davrieux F., Mera A.C., Alves G.S.C., Lavagnini G.V., Leroy T., Bonnot F., Rocha O.C., Bartholo G.F., Guerra A.F., Rodrigues G.C., Marraccini P., Andrade A.C. 2016. Controlled irrigation and nitrogen, phosphorous and potassium fertilization affect the biochemical composition and quality of Arabica coffee beans. Journal of Agricultural Science : 17 p.

http://dx.doi.org/10.1017/S0021859616000988

Yuyama P.M., Reis Júnior O., Ivamoto S.T., Domingues D.S., Carazzolle M.F., Pereira G.A.G., Charmetant P., Leroy T., Pereira L.F.P. 2016. Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits. Molecular Genetics and Genomics, 291 (1) : p. 323-336. http://dx.doi.org/10.1007/s00438-015-1111-x

2015

Dechamp E., Breitler J.C., Leroy T., Etienne H. 2015. Coffee (Coffea arabica L.). In : Wang Kan (ed.). Agrobacterium Protocols: Volume 2. s.l. : Springer, p. 275-291. (Methods in Molecular Biology, 1224). http://dx.doi.org/10.1007/978-1-4939-1658-0_22

Perthuis B., Vassal J.M., Fenouillet C., Leroy T. 2015. Cry1Ac insecticidal protein levels in genetically modified Coffea canephora Pierre coffee plants were negatively correlated with the growth speed in a field experiment. Euphytica, 202 (3) : p. 373-383. http://dx.doi.org/10.1007/s10681-014-1258-2

Rafflegeau S., Losch B., Daviron B., Bastide P., Charmetant P., Lescot T., Prades A., Sainte-Beuve J. 2015. Contributing to production and to international markets. In : Sourisseau Jean-Michel (ed.). Family farming and the Worlds to come. Dordrecht : Springer [Pays-Bas], p. 129-144. 

http://dx.doi.org/10.1007/978-94-017-9358-2_8

2014

Denoeud F., Carretero-Paulet L., Dereeper A., Droc G., Guyot R., Pietrella M., Chunfang Zheng, Alberti A., Anthony F., Aprea G., Aury J.M., Bento P., Bernard M., Bocs S., Campa C., Cenci A., Combes M.C., Crouzillat D., Da Silva C., Daddiego L., De Bellis F., Dussert S., Garsmeur O., Gayraud T., Guignon V., Jahn K., Jamilloux V., Joët T., Labadie K., Tianying Lan, Leclercq J., Lepelley M., Leroy T., Lei-Ting Li, Librado P., Lopez L., Muñoz A., Noël B., Pallavicini A., Perrotta G., Poncet V., Pot D., Priyono, Rigoreau M., Rouard M., Rozas J., Tranchant-Dubreuil C., VanBuren R., Qiong Zhang, Andrade A.A., Argout X., Bertrand B., De Kochko A., Graziosi G., Henry R., Jayarama, Ming R., Nagai C., Rounsley S., Sankoff D., Giuliano G., Albert V.A., Wincker P., Lashermes P. 2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science, 345 (6201) : p. 1181-1184. http://dx.doi.org/10.1126/science.1255274

Déon M., Fumanal B., Gimenez S., Bieysse D., Oliveira R.R., Shuib S.S., Breton F., Elumalai S., Vida J.B., Seguin M., Leroy T., Roeckel-Drevet P., Pujade-Renaud V. 2014. Diversity of the cassiicolin gene in Corynespora cassiicola and relation with the pathogenicity in Hevea brasiliensis. Fungal Biology, 118 (1) : p. 32-47. http://dx.doi.org/10.1016/j.funbio.2013.10.011

Dos Santos Scholz M.B., Good-Kitzberger C.S., Protasio Pereira L.F., Davrieux F., Pot D., Charmetant P., Leroy T. 2014. Application of near infrared spectroscopy for green coffee biochemical phenotyping. Journal of Near Infrared Spectroscopy, 22 (6) : p. 411-421. http://dx.doi.org/10.1255/jnirs.1136

Leroy T., Coumaré O., Kouressy M., Trouche G., Sidibé A., Sissoko S., Touré A., Guindo T., Sogoba B., Dembélé F., Dakouo B., Vaksmann M., Coulibaly H., Bazile D., Dessauw D. 2014. Inscription d'une variété de sorgho obtenue par sélection participative au Mali dans des projets multiacteurs. Agronomie, Environnement et Sociétés, 4 (2) (spec.) : p. 143-152.

Leroy T., De Bellis F., Legnaté H., Musoli P., Kalongji A., Loor Solorzano R.G., Cubry P. 2014. Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora. Genetica, 142 (3) : p. 185-199. http://dx.doi.org/10.1007/s10709-014-9766-5

Montoya C., Cochard B., Flori A., Cros D., Lopes R., Cuellar M.T., Espeout S., Syaputra I., Villeneuve P., Pina M., Ritter E., Leroy T., Billotte N. 2014. Genetic architecture of palm oil fatty Acid composition in cultivated oil palm (Elaeis guineensis Jacq.) compared to Its wild relative E. oleifera (H.B.K) cortés. PloS One, 9 (5) : e95412 (13 p.). http://dx.doi.org/10.1371/journal.pone.0095412

Montoya C., Cuellar M.T., Lopes R., Summo M., Bittencourt D., Pinaglia C., Rivallan R., Espeout S., Pitollat B., Flori A., Villeneuve P., Pina M., Cochard B., Cros D., Herrero J., Omoré A., Zambrano J., Syaputra I., Alarcón W.H., Nouy B., Amblard P., Leroy T., Ritter E., Billotte N. 2014. Genetic determinism of the fatty acid composition of palm oil in Elaeis (E. guineensis Jacq. and E. oleifera (H.B.K) Cortès) by genetic mapping and differential expression analysis of candidate genes : [W550]. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n.. Plant and Animal Genome Conference. 22, 2014-01-11/2014-01-15, San Diego (Etats-Unis).
https://pag.confex.com/pag/xxii/webprogram/Paper9414.html 

Scholz M.B.D.S., Pagiatto N.F., Kitzberger C.S.G., Pereira L.F.P., Davrieux F., Charmetant P., Leroy T. 2014. Validation of near-infrared spectroscopy for the quantification of cafestol and kahweol in green coffee. Food Research International, 61 : p. 176-182.

http://dx.doi.org/10.1016/j.foodres.2013.12.008

2013

Cubry P., De Bellis F., Avia K., Bouchet S., Pot D., Dufour M., Legnaté H., Leroy T. 2013. An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis. BMC Genomics, 14 (10) : 15 p.

http://dx.doi.org/10.1186/1471-2164-14-10

Cubry P., De Bellis F., Pot D., Musoli P., Leroy T. 2013. Global analysis of Coffea canephora Pierre ex Froehner (Rubiaceae) from the Guineo-Congolese region reveals impacts from climatic refuges and migration effects. Genetic Resources and Crop Evolution, 60 (2) : p. 483-501.
http://dx.doi.org/10.1007/s10722-012-9851-5 

Dereeper A., Guyot R., Tranchant-Dubreuil C., Anthony F., Argout X., De Bellis F., Combes M.C., Gavory F., De Kochko A., Kudrna D., Leroy T., Poulain J., Rondeau M.,

Song X., Wing R., Lashermes P. 2013. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology, 83 (3) : p. 177-189.
http://dx.doi.org/10.1007/s11103-013-0077-5 

Ji K., Zhang D., Motilal L.A., Boccara M., Lachenaud P., Meinhardt L.W. 2013. Genetic diversity and parentage in farmer varieties of cacao (Theobroma cacao L.) from Honduras and Nicaragua as revealed by single nucleotide polymorphism (SNP) markers. Genetic Resources and Crop Evolution, 60 (2) : p. 441-453. http://dx.doi.org/10.1007/s10722-012-9847-1

Montoya C., Lopes R., Flori A., Cros D., Cuellar M.T., Summo M., Espeout S., Rivallan R., Risterucci A.M., Bittencourt D., Zambrano Rosero J.E., Alarcón W.H., Villeneuve P., Pina M., Nouy B., Amblard P., Ritter E., Leroy T., Billotte N. 2013. Quantitative trait loci (QTLs) analysis of palm oil fatty acid composition in an interspecific pseudo-backcross from Elaeis oleifera (H.B.K.) Cortés and oil palm (Elaeis guineensis Jacq.). Tree Genetics and Genomes, 9 (5) : p. 1207-1225.

http://dx.doi.org/10.1007/s11295-013-0629-5

Musoli C.P., Cilas C., Pot D., Nabaggala A., Nakendo S., Pande J., Charrier A., Leroy T., Bieysse D. 2013. Inheritance of resistance to coffee wilt disease (Fusarium xylarioides Steyaert) in Robusta coffee (Coffea canephora Pierre) and breeding perspectives. Tree Genetics and Genomes, 9 (2) : p. 351-360.

http://dx.doi.org/10.1007/s11295-012-0557-9

Villain L., Sarah J.L., Hernandez A., Bertrand B., Anthony F., Lashermes P., Charmetant P., Anzueto F., Carneiro R.M.D.G. 2013. Diversity of root-knot nematodes parasitizing coffee in Central America. Nematropica, 43 (2) : p. 194-206. http://journals.fcla.edu/nematropica/article/view/82708

2012

Allègre M., Argout X., Boccara M., Fouet O., Roguet Y., Bérard A., Thévenin J.M., Chauveau A., Rivallan R., Clément D., Courtois B., Gramacho K.P., Boland-Auge A., Tahi M., Umaharan P., Brunel D., Lanaud C. 2012. Discovery and mapping of a new expressed sequence tag-single nucleotide polymorphism and simple sequence repeat panel for large-scale genetic studies and breeding of Theobroma cacao L.. DNA Research, 19 (1) : p. 23-35.

http://dx.doi.org/10.1093/dnares/dsr039

Bertrand B., Montagnon C., Georget F., Charmetant P., Etienne H. 2012. Création et diffusion de variétés de caféiers Arabica : quelles innovations variétales ?. Cahiers Agricultures, 21 (2-3) : p. 77-88.
http://dx.doi.org/10.1684/agr.2012.0547 

Déon M., Bourre Y., Gimenez S., Berger A., Bieysse D., De Lamotte F., Poncet J., Roussel V., Bonnot F., Oliver G., Franchel J., Seguin M., Leroy T., Roeckel-Drevet P., Pujade-Renaud V. 2012. Characterization of a cassiicolin-encoding gene from Corynespora cassiicola, pathogen of rubber tree (Hevea brasiliensis). Plant Science, 185-186 : p. 227-237. http://dx.doi.org/10.1016/j.plantsci.2011.10.017

Déon M., Scomparin A., Tixier A., Mattos C.R.R., Leroy T., Seguin M., Roeckel-Drevet P., Pujade-Renaud V. 2012. First characterization of endophytic Corynespora cassiicola isolates with variant cassiicolin genes recovered from rubber trees in Brazil. Fungal Diversity, 54 (1) : p. 87-99.

http://dx.doi.org/10.1007/s13225-012-0169-6

Guyot R., Lefebvre-Pautigny F., Tranchant-Dubreuil C., Rigoreau M., Hamon P., Leroy T., Hamon S., Poncet J., Crouzillat D., De Kochko A. 2012. Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades. BMC Genomics, 13 (103) : 14 p. http://dx.doi.org/10.1186/1471-2164-13-103

Loor Solorzano R.G., Fouet O., Lemainque A., Pavek S., Boccara M., Argout X., Amores F., Courtois B., Risterucci A.M., Lanaud C. 2012. Insight into the wild origin, migration and domestication history of the fine flavour nacional Theobroma cacao L. variety from Ecuador. PloS One, 7 (11) : e48438 (11 p.). http://dx.doi.org/10.1371/journal.pone.0048438

Marraccini P., Vinecky F., Alves G.S.C., Ramos H.J.O., Elbelt S., Vieira N.G., Carneiro F.A., Sujii P.S., Alekcevetch J.C., Silva V.A., Damatta F.M., Ferrão M.A.G., Leroy T., Pot D., Vieira L.G.E., Da Silva F., Andrade A.C. 2012. Differentially expressed genes and proteins upon drought acclimation in tolerant and sensitive genotypes of Coffea canephora. Journal of Experimental Botany, 63 (11) : p. 4191-4212. http://dx.doi.org/10.1093/jxb/ers103

Montagnon C., Cubry P., Leroy T. 2012. Amélioration génétique du caféier Coffea canephora Pierre : connaissances acquises, stratégies et perspectives. Cahiers Agricultures, 21 (2-3) : p. 143-153.
http://dx.doi.org/10.1684/agr.2012.0556  

Motilal L.A., Zhang D., Umaharan P., Boccara M., Mischke S., Sankar A., Meinhardt L.W. 2012. Elucidation of genetic identity and population structure of cacao germplasm within an international cacao genebank. Plant Genetic Resources, 10 (3) : p. 232-241. http://dx.doi.org/10.1017/S1479262112000305